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  5. Len_g59431

Len_g59431 (AXR6, ATCUL1, CUL1)


Aliases : AXR6, ATCUL1, CUL1

Description : scaffold component *(CUL1) of SCF E3 ubiquitin ligase complexes & original description: none


Gene families : OG0001888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g59431

Target Alias Description ECC score Gene Family Method Actions
Als_g34097 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Als_g52906 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Cba_g24807 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ceric.27G015900.1 AXR6, ATCUL1,... scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Ceric.28G004800.1 AXR6, ATCUL1,... scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020563.191 AXR6, ATCUL1, CUL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Dac_g01754 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Dcu_g04834 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
GSVIVT01010966001 AXR6, ATCUL1, CUL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Gb_16689 AXR6, ATCUL1, CUL1 scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.03 OrthoFinder output from all 47 species
Mp8g03110.1 AXR6, ATCUL1, CUL1 scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.03 OrthoFinder output from all 47 species
Msp_g06115 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Nbi_g29150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30275 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sam_g12468 No alias scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Solyc09g074680.3.1 AXR6, ATCUL1,... scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.02 OrthoFinder output from all 47 species
Zm00001e027502_P001 AXR6, ATCUL1,... scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.02 OrthoFinder output from all 47 species
Zm00001e040431_P004 AXR6, ATCUL1,... scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
MF GO:0031625 ubiquitin protein ligase binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019559 Cullin_neddylation_domain 674 736
IPR001373 Cullin_N 15 647
No external refs found!