Len_g57302

Description : not classified & original description: none

Gene families : OG0002111 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g57302

Target	Alias	Description	ECC score	Gene Family Method
AT1G79990	No alias	structural molecules	0.03	OrthoFinder output from all 47 species
AT3G15980	No alias	Coatomer, beta' subunit	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000608	No alias	subunit beta2 of coat protein complex & original...	0.04	OrthoFinder output from all 47 species
Cba_g71110	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020903.33	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	OrthoFinder output from all 47 species
Cre02.g118500	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	OrthoFinder output from all 47 species
Ehy_g02910	No alias	subunit beta2 of coat protein complex & original...	0.06	OrthoFinder output from all 47 species
Ehy_g08641	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01017121001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	OrthoFinder output from all 47 species
Gb_26317	No alias	subunit beta2 of coat protein complex	0.03	OrthoFinder output from all 47 species
MA_10436677g0010	No alias	Coatomer subunit beta-3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp3g04060.1	No alias	subunit beta2 of coat protein complex	0.02	OrthoFinder output from all 47 species
Ppi_g01343	No alias	subunit beta2 of coat protein complex & original...	0.07	OrthoFinder output from all 47 species
Solyc06g066730.3.1	Solyc06g066730	subunit beta2 of coat protein complex	0.07	OrthoFinder output from all 47 species
Solyc12g043000.3.1	Solyc12g043000	subunit beta2 of coat protein complex	0.02	OrthoFinder output from all 47 species
Spa_g10496	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
Spa_g17544	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Tin_g02168	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Zm00001e024969_P001	Zm00001e024969	subunit beta2 of coat protein complex	0.04	OrthoFinder output from all 47 species
Zm00001e037375_P002	Zm00001e037375	subunit beta2 of coat protein complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006692	Coatomer_WD-assoc_reg	1	426

External Links

No external refs found!

Len_g57302

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation