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  5. Len_g49748

Len_g49748


Description : RNA helicase *(RCF1) & original description: none


Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g49748

Target Alias Description ECC score Gene Family Method Actions
Ala_g15868 No alias RNA helicase *(RCF1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g28448 No alias RNA helicase *(RCF1) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g03604 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01686.t1 Aspi01Gene01686 RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.37G065700.1 Ceric.37G065700 RNA helicase *(RCF1) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000204.43 No alias RNA processing.RNA splicing.spliceosome... 0.04 OrthoFinder output from all 47 species
Cre16.g676400 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Ehy_g09244 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01023849001 No alias DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os08g06344.2 LOC_Os08g06344 RNA helicase (Prp5) 0.03 OrthoFinder output from all 47 species
Lfl_g16955 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
MA_175476g0010 No alias RNA helicase (Prp5) 0.02 OrthoFinder output from all 47 species
Mp1g06750.1 No alias RNA helicase (Prp5) 0.03 OrthoFinder output from all 47 species
Ore_g10272 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52675 No alias RNA helicase *(RCF1) & original description: none 0.06 OrthoFinder output from all 47 species
Smo178562 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Zm00001e040204_P001 Zm00001e040204 RNA helicase (Prp5) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 554 725
IPR001650 Helicase_C 763 871
No external refs found!