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  5. Len_g30937

Len_g30937


Description : component *(SYF1/MAC9) of MAC spliceosome-associated complex & original description: none


Gene families : OG0005359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g30937

Target Alias Description ECC score Gene Family Method Actions
AT5G28740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g108555 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.05 OrthoFinder output from all 47 species
Aob_g02364 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Cre12.g513500 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Dac_g11758 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Gb_19093 No alias component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.08 OrthoFinder output from all 47 species
Lfl_g02367 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Msp_g07761 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018663 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Solyc01g086990.3.1 Solyc01g086990 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.05 OrthoFinder output from all 47 species
Spa_g14889 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Zm00001e010869_P001 Zm00001e010869 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Zm00001e035711_P001 Zm00001e035711 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!