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  5. Len_g24427

Len_g24427


Description : not classified & original description: none


Gene families : OG0002335 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002335_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g24427

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00051p00211030 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g059666 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g059667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12229 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.20G087000.1 Ceric.20G087000 not classified & original description: pacid=50566894... 0.07 OrthoFinder output from all 47 species
Ceric.25G035600.1 Ceric.25G035600 not classified & original description: pacid=50594367... 0.03 OrthoFinder output from all 47 species
Ceric.37G012600.1 Ceric.37G012600 not classified & original description: pacid=50616095... 0.05 OrthoFinder output from all 47 species
Dac_g15819 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g47300.1 LOC_Os06g47300 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g07037 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g03957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g01119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04339 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23008 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g48250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 180 242
IPR000504 RRM_dom 15 78
No external refs found!