Len_g23782 (HIS1-3)

Aliases : HIS1-3

Description : linker histone *(H1) & original description: none

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g23782
Cluster	HCCA: Cluster_154

Target	Alias	Description	ECC score	Gene Family Method
AT1G06760	No alias	winged-helix DNA-binding transcription factor family protein	0.02	OrthoFinder output from all 47 species
AT2G30620	No alias	winged-helix DNA-binding transcription factor family protein	0.03	OrthoFinder output from all 47 species
Adi_g052669	No alias	linker histone *(H1) & original description: none	0.06	OrthoFinder output from all 47 species
Ala_g23326	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g05135	HIS1-3	linker histone *(H1) & original description: none	0.1	OrthoFinder output from all 47 species
Aop_g36461	HIS1-3	linker histone *(H1) & original description: none	0.08	OrthoFinder output from all 47 species
Aspi01Gene00121.t1	Aspi01Gene00121	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene11879.t1	HIS1-3, Aspi01Gene11879	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene11880.t1	HIS1-3, Aspi01Gene11880	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020780.71	HIS1-3	No description available	0.05	OrthoFinder output from all 47 species
Cre13.g567450	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.01	OrthoFinder output from all 47 species
Dac_g20797	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g00585	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g05502	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01028074001	No alias	Chromatin organisation.histones.H1 linker histone	0.03	OrthoFinder output from all 47 species
Gb_02738	No alias	linker histone (H1)	0.02	OrthoFinder output from all 47 species
LOC_Os04g18090.1	HIS1-3, LOC_Os04g18090	linker histone (H1)	0.02	OrthoFinder output from all 47 species
LOC_Os07g08710.1	LOC_Os07g08710	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Len_g04604	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Len_g14042	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
MA_10436125g0010	HIS1-3	linker histone (H1)	0.03	OrthoFinder output from all 47 species
MA_10436125g0020	ATTRB1, TRB1	linker histone (H1)	0.02	OrthoFinder output from all 47 species
MA_877599g0010	No alias	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Mp6g03150.1	HIS1-3	linker histone (H1)	0.02	OrthoFinder output from all 47 species
Msp_g09818	HIS1-3	linker histone *(H1) & original description: none	0.07	OrthoFinder output from all 47 species
Msp_g10563	No alias	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g11041	No alias	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g11042	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g09323	HIS1-3	linker histone *(H1) & original description: none	0.07	OrthoFinder output from all 47 species
Spa_g09324	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g50934	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g50935	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g01715	HIS1-3	linker histone *(H1) & original description: none	0.11	OrthoFinder output from all 47 species
Zm00001e006018_P006	Zm00001e006018	linker histone (H1)	0.02	OrthoFinder output from all 47 species
Zm00001e011857_P001	Zm00001e011857	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Zm00001e032965_P005	Zm00001e032965	linker histone (H1)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	41	108

External Links

No external refs found!

Len_g23782 (HIS1-3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation