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  5. Len_g21346

Len_g21346


Description : not classified & original description: none


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g21346

Target Alias Description ECC score Gene Family Method Actions
AT4G37890 EDA40 Zinc finger (C3HC4-type RING finger) family protein 0.04 OrthoFinder output from all 47 species
Dac_g23044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g056140.4.1 Solyc05g056140 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc11g069600.2.1 Solyc11g069600 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g50317 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02842 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012729_P001 Zm00001e012729 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e015127_P001 Zm00001e015127 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Zm00001e040514_P001 Zm00001e040514 ubiquitin protein ligase (WAV3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR032838 Vwaint_dom 645 712
IPR002035 VWF_A 296 454
IPR001841 Znf_RING 80 109
No external refs found!