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  5. Len_g18994

Len_g18994


Description : E3 UFM ubiquitin ligase & original description: none


Gene families : OG0004043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g18994

Target Alias Description ECC score Gene Family Method Actions
Aob_g15706 No alias E3 UFM ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene37512.t1 Aspi01Gene37512 E3 UFM ubiquitin ligase & original description: none 0.06 OrthoFinder output from all 47 species
Cre16.g686650 No alias Protein degradation.peptide... 0.02 OrthoFinder output from all 47 species
Dde_g03449 No alias E3 UFM ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os05g02650.1 LOC_Os05g02650 UFM ligase E3 protein 0.02 OrthoFinder output from all 47 species
Lfl_g12595 No alias E3 UFM ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436139g0010 No alias UFM ligase E3 protein 0.02 OrthoFinder output from all 47 species
Mp3g01510.1 No alias UFM ligase E3 protein 0.02 OrthoFinder output from all 47 species
Ore_g16015 No alias E3 UFM ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010049 No alias E3 UFM ubiquitin ligase & original description: CDS=104-2596 0.03 OrthoFinder output from all 47 species
Sam_g16609 No alias E3 UFM ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Smo113645 No alias Protein degradation.peptide... 0.02 OrthoFinder output from all 47 species
Solyc11g072950.3.1 Solyc11g072950 UFM ligase E3 protein 0.02 OrthoFinder output from all 47 species
Zm00001e029565_P001 Zm00001e029565 UFM ligase E3 protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061666 UFM1 ligase activity IEA Interproscan
BP GO:0071569 protein ufmylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR018611 Ufl1 4 291
No external refs found!