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Aliases : ATF1, TRXF1
Description : F-type thioredoxin *(Trx-F) & original description: none
Gene families : OG0001099 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001099_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Len_g18423 | |
| Cluster | HCCA: Cluster_48 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00049p00119540 | ATF1, TRXF1,... | Redox homeostasis.chloroplast redox homeostasis.F-type... | 0.04 | OrthoFinder output from all 47 species | |
| AT3G02730 | ATF1, TRXF1 | thioredoxin F-type 1 | 0.12 | OrthoFinder output from all 47 species | |
| Adi_g003203 | TRXF2, ATF2 | F-type thioredoxin *(Trx-F) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g102129 | TRXF2, ATF2 | F-type thioredoxin *(Trx-F) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g03766 | ATF1, TRXF1 | not classified & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Aev_g06364 | TRXF2, ATF2 | F-type thioredoxin *(Trx-F) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g02991 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Als_g00422 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Als_g07635 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.16 | OrthoFinder output from all 47 species | |
| Aob_g02814 | TRXF2, ATF2 | F-type thioredoxin *(Trx-F) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g02927 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g14486 | TRXF2, ATF2 | F-type thioredoxin *(Trx-F) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene19335.t1 | ATF1, TRXF1,... | F-type thioredoxin *(Trx-F) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene48932.t1 | TRXF2, ATF2,... | F-type thioredoxin *(Trx-F) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s2245.g109976 | TRXF2, ATF2 | F-type thioredoxin *(Trx-F) & original description: CDS=10-579 | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g12466 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.33G066400.1 | TRXF2, ATF2,... | F-type thioredoxin *(Trx-F) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.37G049100.1 | ATHM4, TRX-M4,... | not classified & original description: pacid=50616292... | 0.07 | OrthoFinder output from all 47 species | |
| Cre05.g243050 | TRXF2, ATF2 | Redox homeostasis.chloroplast redox homeostasis.F-type... | 0.03 | OrthoFinder output from all 47 species | |
| Cre12.g496700 | No alias | No description available | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g09180 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Dcu_g12181 | TRXF2, ATF2 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g26524 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g25843 | TRXF2, ATF2 | F-type thioredoxin *(Trx-F) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ehy_g02038 | ATF1, TRXF1 | plastidial thioredoxin *(TrxL1) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01019070001 | TRXF2, ATF2 | Redox homeostasis.chloroplast redox homeostasis.F-type... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_20154 | ATF1, TRXF1 | no hits & (original description: none) | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os01g68480.1 | TRXF2, ATF2,... | F-type thioredoxin | 0.02 | OrthoFinder output from all 47 species | |
| MA_29361g0010 | TRXF2, ATF2 | F-type thioredoxin | 0.03 | OrthoFinder output from all 47 species | |
| MA_5229g0010 | No alias | no hits & (original description: none) | 0.08 | OrthoFinder output from all 47 species | |
| Mp2g20740.1 | ATF1, TRXF1 | F-type thioredoxin | 0.06 | OrthoFinder output from all 47 species | |
| Mp3g08490.1 | ATF1, TRXF1 | F-type thioredoxin | 0.08 | OrthoFinder output from all 47 species | |
| Msp_g29081 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Nbi_g02641 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Ore_g14018 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g26787 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Pir_g65672 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g12320 | TRXF2, ATF2 | F-type thioredoxin *(Trx-F) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pnu_g19425 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g30576 | TRXF2, ATF2 | F-type thioredoxin *(Trx-F) & original description: none | 0.14 | OrthoFinder output from all 47 species | |
| Ppi_g33020 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0059.g015100 | TRXF2, ATF2 | F-type thioredoxin *(Trx-F) & original description: CDS=110-658 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g28295 | No alias | F-type thioredoxin *(Trx-F) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo110708 | TRXF2, ATF2 | Redox homeostasis.chloroplast redox homeostasis.F-type... | 0.04 | OrthoFinder output from all 47 species | |
| Smo77812 | ATH5, ATTRX5, TRX5, LIV1 | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g056300.4.1 | ATF1, TRXF1,... | F-type thioredoxin | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g30029 | ACHT3 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g51722 | ATF1, TRXF1 | F-type thioredoxin *(Trx-F) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Tin_g21213 | TRXF2, ATF2 | not classified & original description: none | 0.16 | OrthoFinder output from all 47 species | |
| Zm00001e027512_P002 | TRXF2, ATF2,... | F-type thioredoxin | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e040421_P002 | TRXF2, ATF2,... | F-type thioredoxin | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004618 | phosphoglycerate kinase activity | IEP | HCCA |
| MF | GO:0005216 | monoatomic ion channel activity | IEP | HCCA |
| MF | GO:0005261 | monoatomic cation channel activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
| BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0006096 | glycolytic process | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
| BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
| BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| MF | GO:0009916 | alternative oxidase activity | IEP | HCCA |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015252 | proton channel activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | HCCA |
| BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
| MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | HCCA |
| MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | HCCA |
| MF | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| MF | GO:0016854 | racemase and epimerase activity | IEP | HCCA |
| MF | GO:0016857 | racemase and epimerase activity, acting on carbohydrates and derivatives | IEP | HCCA |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
| MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
| BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | IEP | HCCA |
| CC | GO:0034357 | photosynthetic membrane | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| CC | GO:0042651 | thylakoid membrane | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| CC | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | IEP | HCCA |
| BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
| BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | HCCA |
| BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013766 | Thioredoxin_domain | 124 | 207 |
| No external refs found! |