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  5. Len_g17365

Len_g17365 (Tudor1, AtTudor1, TSN1)


Aliases : Tudor1, AtTudor1, TSN1

Description : mRNA endoribonuclease *(TSN) & original description: none


Gene families : OG0004117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g17365

Target Alias Description ECC score Gene Family Method Actions
Ala_g08386 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021357.70 Tudor1, AtTudor1, TSN1 Ribonuclease TUDOR 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_32409 Tudor1, AtTudor1, TSN1 ribonuclease (TSN) 0.02 OrthoFinder output from all 47 species
LOC_Os02g32350.1 Tudor1,... ribonuclease (TSN) 0.02 OrthoFinder output from all 47 species
Pnu_g08514 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
MF GO:0004312 fatty acid synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0009922 fatty acid elongase activity IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR016071 Staphylococal_nuclease_OB-fold 869 980
IPR016071 Staphylococal_nuclease_OB-fold 35 142
IPR016071 Staphylococal_nuclease_OB-fold 266 359
IPR016071 Staphylococal_nuclease_OB-fold 628 726
IPR002999 Tudor 750 857
No external refs found!