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  5. Len_g16443

Len_g16443 (NEF1)


Aliases : NEF1

Description : exine patterning factor *(NEF1) & original description: none


Gene families : OG0004275 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004275_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g16443

Target Alias Description ECC score Gene Family Method Actions
Cre01.g018050 NEF1 Cell wall.sporopollenin.exine wall formation.NEF1 exine... 0.01 OrthoFinder output from all 47 species
Gb_19950 NEF1 exine patterning factor (NEF1) 0.02 OrthoFinder output from all 47 species
LOC_Os11g32470.1 NEF1, LOC_Os11g32470 exine patterning factor (NEF1) 0.03 OrthoFinder output from all 47 species
MA_106922g0010 NEF1 exine patterning factor (NEF1) 0.03 OrthoFinder output from all 47 species
Msp_g03573 NEF1 exine patterning factor *(NEF1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g033282.1.1 NEF1, Solyc11g033282 exine patterning factor (NEF1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!