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  5. Len_g16187

Len_g16187


Description : regulatory protein *(PATROL1) involved in cellulose synthase trafficking & original description: none


Gene families : OG0000883 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000883_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g16187

Target Alias Description ECC score Gene Family Method Actions
AT2G25800 No alias Protein of unknown function (DUF810) 0.02 OrthoFinder output from all 47 species
Adi_g024946 No alias regulatory protein *(PATROL1) involved in cellulose... 0.02 OrthoFinder output from all 47 species
Aev_g02574 No alias regulatory protein *(PATROL1) involved in cellulose... 0.06 OrthoFinder output from all 47 species
Aev_g02581 No alias regulatory protein *(PATROL1) involved in cellulose... 0.04 OrthoFinder output from all 47 species
Ala_g02603 No alias regulatory protein *(PATROL1) involved in cellulose... 0.06 OrthoFinder output from all 47 species
Als_g05748 No alias regulatory protein *(PATROL1) involved in cellulose... 0.06 OrthoFinder output from all 47 species
Aop_g06979 No alias regulatory protein *(PATROL1) involved in cellulose... 0.03 OrthoFinder output from all 47 species
Ceric.13G084700.1 Ceric.13G084700 regulatory protein *(PATROL1) involved in cellulose... 0.03 OrthoFinder output from all 47 species
Ehy_g01671 No alias regulatory protein *(PATROL1) involved in cellulose... 0.03 OrthoFinder output from all 47 species
GSVIVT01019827001 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01035623001 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
GSVIVT01036645001 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Gb_20494 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_29552 No alias regulatory protein (PATROL1) of CSC trafficking 0.02 OrthoFinder output from all 47 species
LOC_Os03g47930.1 LOC_Os03g47930 regulatory protein (PATROL1) of CSC trafficking 0.06 OrthoFinder output from all 47 species
LOC_Os08g30070.1 LOC_Os08g30070 Protein unc-13 homolog OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10425785g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10431429g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10436391g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_12587g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_165845g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
MA_68516g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_715866g0010 No alias Protein unc-13 homolog OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp4g07000.1 No alias regulatory protein (PATROL1) of CSC trafficking 0.04 OrthoFinder output from all 47 species
Nbi_g03194 No alias regulatory protein *(PATROL1) involved in cellulose... 0.07 OrthoFinder output from all 47 species
Nbi_g10306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18251 No alias regulatory protein *(PATROL1) involved in cellulose... 0.03 OrthoFinder output from all 47 species
Pnu_g08959 No alias regulatory protein *(PATROL1) involved in cellulose... 0.03 OrthoFinder output from all 47 species
Smo92955 No alias Protein unc-13 homolog OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc08g066600.4.1 Solyc08g066600 Protein unc-13 homolog OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species
Spa_g06397 No alias regulatory protein *(PATROL1) involved in cellulose... 0.07 OrthoFinder output from all 47 species
Zm00001e004190_P001 Zm00001e004190 Protein unc-13 homolog OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!