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  5. Len_g14720

Len_g14720 (ATX4, SDG16)


Aliases : ATX4, SDG16

Description : class-III histone methyltransferase *(Trx) & original description: none


Gene families : OG0000660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000660_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g14720

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00081590 SDG25, ATXR7,... Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
AT3G61740 ATX3, SDG14 SET domain protein 14 0.02 OrthoFinder output from all 47 species
AT5G42400 SDG25, ATXR7 SET domain protein 25 0.06 OrthoFinder output from all 47 species
Ala_g07772 SDG25, ATXR7 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ala_g11407 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Ala_g11532 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.06 OrthoFinder output from all 47 species
Als_g16658 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Als_g29274 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Als_g56618 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Aob_g23333 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Aob_g29752 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Aob_g31865 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Aop_g06246 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene65361.t1 SDG25, ATXR7,... class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Ceric.01G107400.1 ATX4, SDG16,... class-III histone methyltransferase *(Trx) & original... 0.06 OrthoFinder output from all 47 species
Ceric.32G012900.1 SDG25, ATXR7,... EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cre09.g395584 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre11.g475950 SDG25, ATXR7 Histone-lysine N-methyltransferase ATXR7 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g07171 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.06 OrthoFinder output from all 47 species
Dcu_g09379 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g24243 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01038708001 ATX4, SDG16 Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
Gb_04139 SDG25, ATXR7 class III/Trithorax histone methyltransferase component... 0.03 OrthoFinder output from all 47 species
LOC_Os12g41900.1 SDG25, ATXR7,... class III/Trithorax histone methyltransferase component... 0.03 OrthoFinder output from all 47 species
Len_g23260 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g09511 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g10001 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g17819 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
MA_14080g0020 ATX3, SDG14 Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_89959g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g17790.1 SDG25, ATXR7 class III/Trithorax histone methyltransferase component... 0.06 OrthoFinder output from all 47 species
Mp4g21720.1 ATX4, SDG16 class III/Trithorax histone methyltransferase component... 0.03 OrthoFinder output from all 47 species
Ppi_g09508 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0199.g025555 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Sam_g14051 No alias class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Sam_g14555 No alias class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Smo164635 ATX3, SDG14 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Spa_g47178 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Spa_g55030 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Tin_g13372 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.06 OrthoFinder output from all 47 species
Zm00001e027986_P003 ATX4, SDG16,... class III/Trithorax histone methyltransferase component... 0.02 OrthoFinder output from all 47 species
Zm00001e039307_P005 SDG25, ATXR7,... class III/Trithorax histone methyltransferase component... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000313 PWWP_dom 819 912
IPR001214 SET_dom 1411 1517
No external refs found!