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  5. Len_g13013

Len_g13013 (PRA1.B4)


Aliases : PRA1.B4

Description : B-G-class Rab-GDF protein & original description: none


Gene families : OG0000542 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000542_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g13013
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT4G29658 PRA1.C prenylated RAB acceptor 1.C 0.03 OrthoFinder output from all 47 species
AT5G07110 PRA1.B6 prenylated RAB acceptor 1.B6 0.02 OrthoFinder output from all 47 species
Als_g12994 PRA1.B5 B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15726 PRA1.B5 B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00225 PRA1.B5 B-G-class Rab-GDF protein & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g01011 PRA1.B1 B-G-class Rab-GDF protein & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene65235.t1 PRA1.B5, Aspi01Gene65235 B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.36G034000.1 PRA1.B1, Ceric.36G034000 B-G-class Rab-GDF protein & original description:... 0.05 OrthoFinder output from all 47 species
Dac_g08868 PRA1.B1 B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g39670.1 PRA1.B2, LOC_Os05g39670 B-G-class Rab-GDF protein 0.02 OrthoFinder output from all 47 species
Lfl_g12734 PRA1.B4 B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species
MA_10435202g0010 PRA1.B1 B-G-class Rab-GDF protein 0.02 OrthoFinder output from all 47 species
MA_502220g0010 No alias PRA1 family protein D OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g06102 PRA1.B1 B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10850 PRA1.B3 B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17272 PRA1.B2 B-G-class Rab-GDF protein & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017592 PRA1.B3 B-G-class Rab-GDF protein & original description: CDS=1-558 0.03 OrthoFinder output from all 47 species
Sam_g52062 No alias B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g050570.3.1 PRA1.B3, Solyc06g050570 B-G-class Rab-GDF protein 0.01 OrthoFinder output from all 47 species
Spa_g10214 PRA1.B5 B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g32605 PRA1.B4 B-G-class Rab-GDF protein & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g15611 PRA1.B2 B-G-class Rab-GDF protein & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e016549_P001 PRA1.F3, PRA8,... B-G-class Rab-GDF protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR004895 Prenylated_rab_accept_PRA1 75 215
No external refs found!