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  5. Len_g11569

Len_g11569


Description : heavy chain of clathrin triskelion & original description: none


Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g11569
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00168430 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.08 OrthoFinder output from all 47 species
AT3G08530 No alias Clathrin, heavy chain 0.03 OrthoFinder output from all 47 species
AT3G11130 No alias Clathrin, heavy chain 0.11 OrthoFinder output from all 47 species
Adi_g011980 No alias heavy chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g20290 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12409 No alias heavy chain of clathrin triskelion & original description: none 0.07 OrthoFinder output from all 47 species
Als_g14456 No alias heavy chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0021.g015746 No alias heavy chain of clathrin triskelion & original... 0.09 OrthoFinder output from all 47 species
Azfi_s0078.g038251 No alias heavy chain of clathrin triskelion & original... 0.1 OrthoFinder output from all 47 species
Cba_g27949 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g27951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G067200.1 Ceric.06G067200 heavy chain of clathrin triskelion & original... 0.06 OrthoFinder output from all 47 species
Ceric.1Z011000.1 Ceric.1Z011000 heavy chain of clathrin triskelion & original... 0.1 OrthoFinder output from all 47 species
Ceric.1Z275900.1 Ceric.1Z275900 heavy chain of clathrin triskelion & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.11 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Cre02.g101400 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
Dcu_g02059 No alias heavy chain of clathrin triskelion & original description: none 0.09 OrthoFinder output from all 47 species
Dde_g10505 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024708001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
GSVIVT01032792001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.11 OrthoFinder output from all 47 species
Gb_33028 No alias heavy chain of clathrin triskelion 0.1 OrthoFinder output from all 47 species
Gb_33029 No alias Clathrin heavy chain 2 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
LOC_Os11g01380.1 LOC_Os11g01380 heavy chain of clathrin triskelion 0.12 OrthoFinder output from all 47 species
LOC_Os12g01390.1 LOC_Os12g01390 heavy chain of clathrin triskelion 0.07 OrthoFinder output from all 47 species
Lfl_g03514 No alias heavy chain of clathrin triskelion & original description: none 0.08 OrthoFinder output from all 47 species
MA_47260g0010 No alias Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
MA_528g0010 No alias Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
MA_5992036g0010 No alias Clathrin heavy chain 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_641648g0010 No alias Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
MA_8471497g0010 No alias Clathrin heavy chain 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp6g19660.1 No alias heavy chain of clathrin triskelion 0.05 OrthoFinder output from all 47 species
Nbi_g03873 No alias heavy chain of clathrin triskelion & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g16662 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13635 No alias heavy chain of clathrin triskelion & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g29284 No alias heavy chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002555 No alias heavy chain of clathrin triskelion & original... 0.03 OrthoFinder output from all 47 species
Sam_g11622 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g36809 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo149750 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.06 OrthoFinder output from all 47 species
Solyc03g096000.3.1 Solyc03g096000 heavy chain of clathrin triskelion 0.03 OrthoFinder output from all 47 species
Solyc05g052510.4.1 Solyc05g052510 heavy chain of clathrin triskelion 0.11 OrthoFinder output from all 47 species
Solyc06g051310.3.1 Solyc06g051310 heavy chain of clathrin triskelion 0.09 OrthoFinder output from all 47 species
Spa_g48226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08699 No alias heavy chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e009296_P003 Zm00001e009296 heavy chain of clathrin triskelion 0.12 OrthoFinder output from all 47 species
Zm00001e020822_P001 Zm00001e020822 heavy chain of clathrin triskelion 0.13 OrthoFinder output from all 47 species
Zm00001e023940_P002 Zm00001e023940 heavy chain of clathrin triskelion 0.12 OrthoFinder output from all 47 species
Zm00001e039167_P001 Zm00001e039167 heavy chain of clathrin triskelion 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA Interproscan
CC GO:0030132 clathrin coat of coated pit IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000547 Clathrin_H-chain/VPS_repeat 557 692
IPR000547 Clathrin_H-chain/VPS_repeat 1437 1579
IPR000547 Clathrin_H-chain/VPS_repeat 850 982
IPR000547 Clathrin_H-chain/VPS_repeat 1144 1281
IPR000547 Clathrin_H-chain/VPS_repeat 993 1133
IPR000547 Clathrin_H-chain/VPS_repeat 701 839
IPR000547 Clathrin_H-chain/VPS_repeat 1292 1431
IPR022365 Clathrin_H-chain_propeller_rpt 155 197
IPR015348 Clathrin_H-chain_linker_core 344 367
No external refs found!