Len_g09763

Description : regulatory protein *(BDR) involved in RNA polymerase-II transcription & original description: none

Gene families : OG0002847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002847_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g09763

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00142p00104490	evm_27.TU.AmTr_v1...	No description available	0.02	OrthoFinder output from all 47 species
Adi_g081371	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g48837	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Ala_g02676	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Aob_g15719	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Ceric.04G072000.1	Ceric.04G072000	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Ceric.07G056700.1	Ceric.07G056700	regulatory protein *(BDR) involved in RNA polymerase-II...	0.07	OrthoFinder output from all 47 species
Dcu_g46980	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Dcu_g50904	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.05	OrthoFinder output from all 47 species
GSVIVT01035723001	No alias	No description available	0.06	OrthoFinder output from all 47 species
LOC_Os02g11780.1	LOC_Os02g11780	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Msp_g15789	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Nbi_g36175	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Pir_g11843	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Ppi_g39270	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016191	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.07	OrthoFinder output from all 47 species
Sam_g08989	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.02	OrthoFinder output from all 47 species
Sam_g16219	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Sam_g36170	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Solyc07g007850.2.1	Solyc07g007850	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Solyc08g067790.4.1	Solyc08g067790	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Spa_g04580	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Zm00001e024973_P001	Zm00001e024973	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003618	TFIIS_cen_dom	92	259
IPR012921	SPOC_C	477	623

External Links

No external refs found!

Len_g09763

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation