Len_g09311 (HIS1-3)

Aliases : HIS1-3

Description : linker histone *(H1) & original description: none

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g09311

Target	Alias	Description	ECC score	Gene Family Method
Adi_g104846	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g01819	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g06850	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0049.g030788	No alias	linker histone *(H1) & original description: CDS=1-786	0.03	OrthoFinder output from all 47 species
Ceric.30G028200.1	HIS1-3, Ceric.30G028200	linker histone *(H1) & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.30G041600.1	Ceric.30G041600	linker histone *(H1) & original description:...	0.03	OrthoFinder output from all 47 species
Cre13.g567450	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.01	OrthoFinder output from all 47 species
GSVIVT01000755001	No alias	Chromatin organisation.histones.H1 linker histone	0.03	OrthoFinder output from all 47 species
Gb_02738	No alias	linker histone (H1)	0.02	OrthoFinder output from all 47 species
LOC_Os04g18090.1	HIS1-3, LOC_Os04g18090	linker histone (H1)	0.01	OrthoFinder output from all 47 species
MA_10428517g0010	No alias	linker histone (H1)	0.02	OrthoFinder output from all 47 species
MA_8477g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Pir_g20263	No alias	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g12516	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e011859_P001	Zm00001e011859	linker histone (H1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	229	296

External Links

No external refs found!

Len_g09311 (HIS1-3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation