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  5. Len_g03879

Len_g03879


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g03879

Target Alias Description ECC score Gene Family Method Actions
Ala_g32458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26421 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g38833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39787 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55329 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16410 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36332.t1 Aspi01Gene36332 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029919 No alias not classified & original description: CDS=1-2448 0.02 OrthoFinder output from all 47 species
Cba_g07194 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07750 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g23468 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04853 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g49830.1 LOC_Os02g49830 Pentatricopeptide repeat-containing protein At3g22690... 0.02 OrthoFinder output from all 47 species
LOC_Os08g37520.1 LOC_Os08g37520 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Len_g08128 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18233 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g25458 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g26319 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33773 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g36226 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_179801g0020 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31349 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45777 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27639 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37213 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g35061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g44215 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 89 135
IPR002885 Pentatricopeptide_repeat 292 339
IPR002885 Pentatricopeptide_repeat 397 441
IPR002885 Pentatricopeptide_repeat 190 237
IPR002885 Pentatricopeptide_repeat 369 392
IPR002885 Pentatricopeptide_repeat 63 85
IPR002885 Pentatricopeptide_repeat 165 187
IPR002885 Pentatricopeptide_repeat 267 288
No external refs found!