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  5. Nbi_g44001

Nbi_g44001 (EXP15, ATEXPA15,...)


Aliases : EXP15, ATEXPA15, ATHEXP ALPHA 1.3, ATEXP15, EXPA15

Description : alpha-class expansin & original description: none


Gene families : OG0000032 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g44001

Target Alias Description ECC score Gene Family Method Actions
AT1G12560 ATEXP7, EXPA7,... expansin A7 0.03 OrthoFinder output from all 47 species
AT1G62980 EXPA18, EXP18,... expansin A18 0.03 OrthoFinder output from all 47 species
Aspi01Gene00435.t1 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0206.g057815 EXPA16, ATHEXP... alpha-class expansin & original description: CDS=254-1036 0.02 OrthoFinder output from all 47 species
Azfi_s0515.g074978 ATEXPA10,... alpha-class expansin & original description: CDS=109-912 0.05 OrthoFinder output from all 47 species
LOC_Os01g14650.1 ATEXPA1, EXP1,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
LOC_Os03g04020.1 ATEXLA1, EXPL1,... alpha-like-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os10g40720.1 ATHEXP BETA 1.4,... Expansin-B3 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
MA_41212g0010 ATHEXP BETA 3.1,... beta-like-class expansin 0.04 OrthoFinder output from all 47 species
MA_7438095g0010 ATEXPL2, EXPL2,... Expansin-like A2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_792493g0010 ATEXPA10,... alpha-class expansin 0.04 OrthoFinder output from all 47 species
MA_91602g0010 EXPA8, ATHEXP... Expansin-A2 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Mp3g03970.1 EXP15, ATEXPA15,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Smo230202 EXPA2, ATHEXP... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
Solyc01g010890.4.1 EXP15, ATEXPA15,... alpha-class expansin 0.04 OrthoFinder output from all 47 species
Solyc06g005560.4.1 ATEXPA4, ATEXP4,... alpha-class expansin 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 212 288
IPR009009 RlpA-like_DPBB 120 201
No external refs found!