AT3G07970 (QRT2)


Aliases : QRT2

Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000383 (Gene family) Phylogenetic Tree(s): OG0000383_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G07970
Cluster HCCA cluster: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AT1G80170 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.04 Gene family
AT5G44830 No alias Pectin lyase-like superfamily protein 0.05 Gene family
GSVIVT01008061001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01008062001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
GSVIVT01032118001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
GSVIVT01038447001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
LOC_Os03g59330 Os03g0808000,... 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
MA_285723g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc04g015530.2.1 Solyc04g015530.2 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc12g009420.2.1 Solyc12g009420.2 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d034552 GRMZM2G111609 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d038874 GRMZM2G079263 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IDA Arabidopsis.org
MF GO:0004650 polygalacturonase activity ISS Arabidopsis.org
CC GO:0005576 extracellular region ISM Arabidopsis.org
BP GO:0005975 carbohydrate metabolic process ISS Arabidopsis.org
BP GO:0009830 cell wall modification involved in abscission TAS Arabidopsis.org
BP GO:0009901 anther dehiscence IMP Arabidopsis.org
BP GO:0010047 fruit dehiscence IMP Arabidopsis.org
BP GO:0045490 pectin catabolic process IMP Arabidopsis.org
BP GO:0048235 pollen sperm cell differentiation IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 97 427
No external refs found!