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  5. Nbi_g11897

Nbi_g11897


Description : not classified & original description: none


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g11897

Target Alias Description ECC score Gene Family Method Actions
Adi_g021764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g040691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29218 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g62599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07339 HEN4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G007100.1 Ceric.14G007100 not classified & original description: pacid=50632910... 0.03 OrthoFinder output from all 47 species
Dcu_g24061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g25970.1 LOC_Os03g25970 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Len_g07805 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g36497 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10430861g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10433640g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_20325g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_6622g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Ore_g06520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16383 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g077060.3.1 Solyc04g077060 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Spa_g05212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g39448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004486_P005 Zm00001e004486 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e026127_P004 Zm00001e026127 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 309 362
IPR004088 KH_dom_type_1 396 463
IPR004088 KH_dom_type_1 47 100
IPR004088 KH_dom_type_1 138 205
No external refs found!