MA_5151g0020


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 515.0)


Gene families : OG_01_0013909 (Archaeplastida) Phylogenetic Tree(s): OG_01_0013909_tree ,
OG_02_0011972 (LandPlants) Phylogenetic Tree(s): OG_02_0011972_tree ,
OG_03_0012004 (SeedPlants) Phylogenetic Tree(s): OG_03_0012004_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_5151g0020
Cluster HCCA: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
Gb_02723 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_24666 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
MA_15061g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_3947g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Gb_02723 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 LandPlants
Gb_24666 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 LandPlants
MA_15061g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 LandPlants
MA_3947g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 LandPlants
Zm00001e010182_P001 No alias Pentatricopeptide repeat-containing protein At2g36980,... 0.02 LandPlants
Gb_02723 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 SeedPlants
Gb_24666 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 SeedPlants
MA_15061g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 SeedPlants
MA_3947g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 SeedPlants
Zm00001e010182_P001 No alias Pentatricopeptide repeat-containing protein At2g36980,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 502 550
IPR002885 Pentatricopeptide_repeat 269 316
IPR002885 Pentatricopeptide_repeat 400 448
IPR002885 Pentatricopeptide_repeat 223 263
IPR002885 Pentatricopeptide_repeat 122 169
IPR002885 Pentatricopeptide_repeat 344 370
IPR002885 Pentatricopeptide_repeat 96 116
IPR002885 Pentatricopeptide_repeat 576 600
No external refs found!