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  5. Nbi_g10160

Nbi_g10160


Description : not classified & original description: none


Gene families : OG0006850 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006850_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g10160

Target Alias Description ECC score Gene Family Method Actions
AT2G28605 No alias Photosystem II reaction center PsbP family protein 0.03 OrthoFinder output from all 47 species
Ceric.04G042500.1 Ceric.04G042500 not classified & original description: pacid=50630591... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000900.25 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g37232 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01022331001 No alias PsbP domain-containing protein 2, chloroplastic... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0118.g021226 No alias not classified & original description: CDS=1234-2040 0.05 OrthoFinder output from all 47 species
Smo91861 No alias PsbP domain-containing protein 2, chloroplastic... 0.02 OrthoFinder output from all 47 species
Solyc04g009420.3.1 Solyc04g009420 PsbP domain-containing protein 2, chloroplastic... 0.06 OrthoFinder output from all 47 species
Zm00001e040897_P001 Zm00001e040897 PsbP domain-containing protein 2, chloroplastic... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP HCCA
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006865 amino acid transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
BP GO:1903825 organic acid transmembrane transport IEP HCCA
BP GO:1905039 carboxylic acid transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 162 315
No external refs found!