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  5. Nbi_g08499

Nbi_g08499 (GMD1)


Aliases : GMD1

Description : EC_4.2 carbon-oxygen lyase & original description: none


Gene families : OG0001979 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001979_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g08499
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AT3G51160 GMD2, MUR1, MUR_1 NAD(P)-binding Rossmann-fold superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g12259 GMD2, MUR1, MUR_1 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g55017 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26634 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.34G056900.1 GMD1, Ceric.34G056900 EC_4.2 carbon-oxygen lyase & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g16156 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05300 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Gb_28531 GMD1 GDP-D-mannose 4,6-dehydratase (MUR1) 0.05 OrthoFinder output from all 47 species
Lfl_g05274 GMD2, MUR1, MUR_1 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
MA_110148g0010 GMD1 GDP-D-mannose 4,6-dehydratase (MUR1) 0.04 OrthoFinder output from all 47 species
Mp1g09600.1 GMD2, MUR1, MUR_1 GDP-D-mannose 4,6-dehydratase (MUR1) 0.02 OrthoFinder output from all 47 species
Ore_g35339 GMD2, MUR1, MUR_1 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17244 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Smo99252 GMD1 Carbohydrate metabolism.nucleotide sugar... 0.04 OrthoFinder output from all 47 species
Spa_g07272 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15131 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g25547 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 10 324
No external refs found!