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  5. Nbi_g05487

Nbi_g05487


Description : histone demethylase *(PKDM8) & original description: none


Gene families : OG0002434 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002434_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05487

Target Alias Description ECC score Gene Family Method Actions
Ala_g19823 No alias histone demethylase *(PKDM8) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g20350 No alias histone demethylase *(PKDM8) & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0016.g014270 No alias histone demethylase *(PKDM8) & original description: CDS=141-2051 0.03 OrthoFinder output from all 47 species
Dac_g12573 No alias histone demethylase *(PKDM8) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g04152 No alias histone demethylase *(PKDM8) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11025 No alias histone demethylase *(PKDM8) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01024382001 No alias Protein modification.phosphorylation.TKL kinase... 0.03 OrthoFinder output from all 47 species
Gb_02799 No alias histone demethylase (PKDM8). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Gb_21111 No alias histone demethylase (PKDM8). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Len_g20483 No alias histone demethylase *(PKDM8) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g35765 No alias histone demethylase *(PKDM8) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14396 No alias histone demethylase *(PKDM8) & original description: none 0.06 OrthoFinder output from all 47 species
Solyc08g076390.3.1 Solyc08g076390 histone demethylase (PKDM8). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
Spa_g26750 No alias histone demethylase *(PKDM8) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012998_P005 Zm00001e012998 histone demethylase (PKDM8). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003349 JmjN 65 98
IPR003347 JmjC_dom 242 365
No external refs found!