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  5. Nbi_g02810

Nbi_g02810


Description : light chain of clathrin triskelion & original description: none


Gene families : OG0002188 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002188_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g02810
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00267500 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
AT2G20760 No alias Clathrin light chain protein 0.04 OrthoFinder output from all 47 species
Ala_g10177 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00585 No alias light chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g45363 No alias light chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.36G039600.1 Ceric.36G039600 light chain of clathrin triskelion & original... 0.04 OrthoFinder output from all 47 species
Dcu_g07971 No alias light chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g03560 No alias light chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g17820 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033974001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.01 OrthoFinder output from all 47 species
LOC_Os06g51510.1 LOC_Os06g51510 light chain of clathrin triskelion 0.07 OrthoFinder output from all 47 species
Len_g30485 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05289 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g03080.1 No alias light chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
Msp_g03939 No alias light chain of clathrin triskelion & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g30776 No alias light chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c11_15000V3.1 Pp3c11_15000 Clathrin light chain protein 0.02 OrthoFinder output from all 47 species
Solyc02g078540.4.1 Solyc02g078540 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc07g054180.4.1 Solyc07g054180 light chain of clathrin triskelion 0.02 OrthoFinder output from all 47 species
Spa_g04777 No alias light chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA Interproscan
CC GO:0030132 clathrin coat of coated pit IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR000996 Clathrin_L-chain 171 276
No external refs found!