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  5. Nbi_g01498

Nbi_g01498 (ICU2)


Aliases : ICU2

Description : catalytic component *(POLA1) of DNA polymerase alpha complex & original description: none


Gene families : OG0005633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005633_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g01498
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00221560 ICU2,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.09 OrthoFinder output from all 47 species
AT5G67100 ICU2 DNA-directed DNA polymerases 0.1 OrthoFinder output from all 47 species
Aev_g08276 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Als_g33916 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.11 OrthoFinder output from all 47 species
Aspi01Gene70874.t1 ICU2, Aspi01Gene70874 catalytic component *(POLA1) of DNA polymerase alpha... 0.04 OrthoFinder output from all 47 species
Azfi_s0226.g059002 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.09 OrthoFinder output from all 47 species
Ceric.09G047200.1 ICU2, Ceric.09G047200 catalytic component *(POLA1) of DNA polymerase alpha... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000237.42 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.03 OrthoFinder output from all 47 species
Cre04.g214350 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.03 OrthoFinder output from all 47 species
Dcu_g12848 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.12 OrthoFinder output from all 47 species
GSVIVT01022113001 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.1 OrthoFinder output from all 47 species
Gb_26053 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.13 OrthoFinder output from all 47 species
Gb_26055 ICU2 DNA polymerase alpha catalytic subunit OS=Oryza sativa... 0.11 OrthoFinder output from all 47 species
LOC_Os01g64820.1 ICU2, LOC_Os01g64820 catalytic component POLA1 of DNA polymerase alpha complex 0.07 OrthoFinder output from all 47 species
Len_g55945 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.1 OrthoFinder output from all 47 species
MA_10427959g0010 ICU2 DNA polymerase alpha catalytic subunit OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
MA_242082g0010 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.11 OrthoFinder output from all 47 species
MA_3471g0020 ICU2 DNA polymerase alpha catalytic subunit OS=Oryza sativa... 0.11 OrthoFinder output from all 47 species
Mp7g03960.1 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.07 OrthoFinder output from all 47 species
Msp_g14735 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.07 OrthoFinder output from all 47 species
Ppi_g18918 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Sam_g08423 No alias catalytic component *(POLA1) of DNA polymerase alpha... 0.08 OrthoFinder output from all 47 species
Solyc02g093300.3.1 ICU2, Solyc02g093300 catalytic component POLA1 of DNA polymerase alpha complex 0.05 OrthoFinder output from all 47 species
Spa_g09409 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.07 OrthoFinder output from all 47 species
Tin_g01298 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.13 OrthoFinder output from all 47 species
Zm00001e019156_P001 ICU2, Zm00001e019156 catalytic component POLA1 of DNA polymerase alpha complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR015088 Znf_DNA-dir_DNA_pol_B_alpha 1349 1563
IPR006133 DNA-dir_DNA_pol_B_exonuc 405 784
IPR006134 DNA-dir_DNA_pol_B_multi_dom 850 1308
IPR024647 DNA_pol_a_cat_su_N 22 89
No external refs found!