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  5. Nbi_g01003

Nbi_g01003


Description : EC_4.2 carbon-oxygen lyase & original description: none


Gene families : OG0005218 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005218_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g01003

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00081330 evm_27.TU.AmTr_v1... Amino acid metabolism.biosynthesis.pyruvate... 0.04 OrthoFinder output from all 47 species
Aop_g11798 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.1Z262700.1 Ceric.1Z262700 EC_4.2 carbon-oxygen lyase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.23G020100.1 Ceric.23G020100 EC_4.2 carbon-oxygen lyase & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000741.5 No alias Dihydroxy-acid dehydratase, chloroplastic OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Lfl_g07040 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g03450.1 No alias dihydroxy-acid dehydratase. dihydroxy-acid dehydratase 0.02 OrthoFinder output from all 47 species
Pp3c11_18700V3.1 Pp3c11_18700 dehydratase family 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008624 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=326-2191 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016836 hydro-lyase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR000581 DiOHA_6PGluconate_deHydtase 92 611
No external refs found!