MA_27512g0010


Description : E3 ubiquitin ligase (PUB)


Gene families : OG_01_0000227 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000227_tree ,
OG_02_0000670 (LandPlants) Phylogenetic Tree(s): OG_02_0000670_tree ,
OG_03_0001036 (SeedPlants) Phylogenetic Tree(s): OG_03_0001036_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_27512g0010
Cluster HCCA: Cluster_394

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00052670 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT5G42340 PUB15 Plant U-Box 15 0.03 Archaeplastida
Gb_08792 No alias U-box domain-containing protein 1 OS=Medicago truncatula... 0.02 Archaeplastida
Gb_12875 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
LOC_Os01g60860.1 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os08g37570.1 No alias U-box domain-containing protein 15 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os12g38210.1 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
MA_1773g0020 No alias U-box domain-containing protein 1 OS=Medicago truncatula... 0.02 Archaeplastida
Pp3c23_15760V3.1 No alias plant U-box 13 0.03 Archaeplastida
Pp3c23_8770V3.1 No alias plant U-box 14 0.02 Archaeplastida
Smo231208 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Smo415326 No alias U-box domain-containing protein 1 OS=Medicago truncatula 0.03 Archaeplastida
Solyc11g008390.2.1 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Zm00001e001226_P001 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Zm00001e013323_P001 No alias U-box domain-containing protein 15 OS=Arabidopsis... 0.02 Archaeplastida
Smo231208 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 LandPlants

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003613 Ubox_domain 122 191
IPR000225 Armadillo 329 367
IPR000225 Armadillo 288 326
IPR000225 Armadillo 246 285
No external refs found!