GSVIVT01027087001


Description : 34.22 transport.cyclic nucleotide or calcium regulated channels member of Cyclic nucleotide gated channel family cyclic nucleotide gated channel 1 (CNGC1)


Gene families : OG_01_0000081 (Gene family) Phylogenetic Tree(s): OG0000081_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01027087001
Cluster HCCA cluster: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AT1G15990 CNGC7, ATCNGC7 cyclic nucleotide gated channel 7 0.03 Gene family
AT1G19780 ATCNGC8, CNGC8 cyclic nucleotide gated channel 8 0.03 Gene family
AT2G46430 ATCNGC3, CNGC3, CNGC3.C cyclic nucleotide gated channel 3 0.05 Gene family
AT2G46440 CNGC11, ATCNGC11 cyclic nucleotide-gated channels 0.03 Gene family
AT3G17700 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-binding transporter 1 0.05 Gene family
AT4G01010 ATCNGC13, CNGC13 cyclic nucleotide-gated channel 13 0.05 Gene family
LOC_Os06g08850 Os06g0188000 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
LOC_Os06g10580 Os06g0207700 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
LOC_Os09g38580 Os09g0558300 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
MA_10425832g0010 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.04 Gene family
MA_10435474g0010 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
MA_10437228g0010 No alias 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
Smo113786 PACid_15418666 No description available 0.02 Gene family
Solyc03g007260.3.1 Solyc03g007260.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
Solyc03g098210.3.1 Solyc03g098210.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.05 Gene family
Solyc05g050350.2.1 Solyc05g050350.2 34.22 transport.cyclic nucleotide or calcium regulated... 0.04 Gene family
Solyc05g050360.3.1 Solyc05g050360.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
Solyc05g050380.3.1 Solyc05g050380.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.06 Gene family
Solyc12g010010.2.1 Solyc12g010010.2 34.22 transport.cyclic nucleotide or calcium regulated... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA InterProScan
BP GO:0006811 ion transport IEA InterProScan
CC GO:0016020 membrane IEA InterProScan
BP GO:0055085 transmembrane transport IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 743 1068
IPR005821 Ion_trans_dom 92 418
IPR000595 cNMP-bd_dom 511 603
IPR000595 cNMP-bd_dom 1165 1259
No external refs found!