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  5. Ehy_g22606

Ehy_g22606 (EMB3011)


Aliases : EMB3011

Description : RNA helicase *(Prp16) & original description: none


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g22606

Target Alias Description ECC score Gene Family Method Actions
AT4G18465 No alias RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT5G13010 EMB3011 RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Als_g13672 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15016 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10626 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13922 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g64809 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G059500.1 Ceric.01G059500 not classified & original description: pacid=50591809... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000984.27 ESP3, EMB2733 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder output from all 47 species
Gb_14269 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 OrthoFinder output from all 47 species
LOC_Os02g19860.1 LOC_Os02g19860 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
LOC_Os06g23530.1 LOC_Os06g23530 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
MA_10435486g0020 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
MA_277016g0010 ESP3, EMB2733 RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
MA_629782g0010 EMB3011 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder output from all 47 species
MA_8723931g0010 EMB3011 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Msp_g31698 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42980 EMB3011 RNA helicase *(Prp16) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48742 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Smo82212 ESP3, EMB2733 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Solyc05g015040.4.1 Solyc05g015040 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Solyc12g089010.3.1 EMB3011, Solyc12g089010 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Zm00001e001487_P003 Zm00001e001487 helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
CC GO:0070461 SAGA-type complex IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 1298 1375
IPR011545 DEAD/DEAH_box_helicase_dom 763 915
IPR007502 Helicase-assoc_dom 1153 1239
IPR001650 Helicase_C 964 1090
No external refs found!