Aliases : ARF6
Description : ARF-type transcription factor & original description: none
Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00021p00200760 | ARF4,... | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00036p00215270 | ARF21,... | Auxin response factor 7 OS=Oryza sativa subsp. japonica | 0.02 | OrthoFinder output from all 47 species | |
AT1G19850 | MP, IAA24, ARF5 | Transcriptional factor B3 family protein /... | 0.02 | OrthoFinder output from all 47 species | |
AT5G20730 | TIR5, MSG1,... | Transcriptional factor B3 family protein /... | 0.04 | OrthoFinder output from all 47 species | |
Adi_g025684 | ARF9 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g057783 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aev_g20472 | ARF6 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aev_g26950 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g32218 | ARF16 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g51944 | ARF19, IAA22, ARF11 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g22072 | ARF16 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g27918 | ARF6 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aob_g33211 | ARF16 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aop_g08752 | ARF16 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0038.g026103 | ARF6 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0129.g048848 | ARF6 | ARF-type transcription factor & original description: CDS=56-2815 | 0.02 | OrthoFinder output from all 47 species | |
Cba_g11427 | ARF6 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g09257 | ARF19, IAA22, ARF11 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01016266001 | ARF16 | Auxin response factor 18 OS=Oryza sativa subsp. japonica | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01025159001 | ARF4 | RNA biosynthesis.transcriptional activation.B3... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01025198001 | ARF10 | RNA biosynthesis.transcriptional activation.B3... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01035204001 | ARF8, ATARF8 | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01035205001 | ARF8, ATARF8 | Auxin response factor 12 OS=Oryza sativa subsp. japonica | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os02g35140.1 | ARF1, LOC_Os02g35140 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os04g59430.1 | ARF17, LOC_Os04g59430 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os10g33940.1 | ARF16, LOC_Os10g33940 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
Len_g20412 | ARF6 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g07072 | ARF16 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
MA_10431695g0010 | ARF19, IAA22, ARF11 | Auxin response factor 19 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
MA_10432528g0010 | ARF4 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
MA_10432580g0010 | HSS, ARF1-BP, ARF2, ORE14 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
MA_122218g0010 | ARF19, IAA22, ARF11 | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species | |
MA_67394g0010 | ARF6 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
MA_73460g0010 | ARF6 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
MA_85955g0010 | ARF19, IAA22, ARF11 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
MA_85955g0020 | ARF19, IAA22, ARF11 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
Mp1g12750.1 | ARF6 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
Ore_g09348 | ARF6 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g41869 | ARF17 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g50454 | TIR5, MSG1,... | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g15530 | ARF16 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0084.g018261 | TIR5, MSG1,... | not classified & original description: CDS=484-2670 | 0.04 | OrthoFinder output from all 47 species | |
Sam_g26224 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g28812 | No alias | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Smo115320 | ARF6 | Auxin response factor 25 OS=Oryza sativa subsp. japonica | 0.02 | OrthoFinder output from all 47 species | |
Solyc02g077560.3.1 | ARF3, ETT, Solyc02g077560 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
Solyc11g069500.2.1 | ARF10, Solyc11g069500 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
Solyc12g006350.3.1 | ARF6, Solyc12g006350 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
Spa_g17172 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e003229_P002 | ARF6, Zm00001e003229 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e006577_P003 | ARF8, ATARF8,... | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e006640_P002 | MP, IAA24, ARF5,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e013061_P001 | ARF16, Zm00001e013061 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e018126_P002 | ARF6, Zm00001e018126 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
CC | GO:0005634 | nucleus | IEA | Interproscan |
BP | GO:0006355 | regulation of DNA-templated transcription | IEA | Interproscan |
BP | GO:0009725 | response to hormone | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
CC | GO:0016592 | mediator complex | IEP | HCCA |
CC | GO:0030117 | membrane coat | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
No external refs found! |