Aliases : SNL3, ATSIN3, SIN3
Description : component *(SNL) of histone deacetylase machineries & original description: none
Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G10450 | SNL6 | SIN3-like 6 | 0.04 | OrthoFinder output from all 47 species | |
AT1G24190 | SNL3, ATSIN3, SIN3 | SIN3-like 3 | 0.02 | OrthoFinder output from all 47 species | |
AT3G01320 | SNL1 | SIN3-like 1 | 0.06 | OrthoFinder output from all 47 species | |
AT5G15020 | SNL2 | SIN3-like 2 | 0.03 | OrthoFinder output from all 47 species | |
Ala_g17667 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.06 | OrthoFinder output from all 47 species | |
Ala_g21578 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
Als_g42067 | SNL4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g52097 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
Als_g52098 | SNL2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g27014 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
Aob_g29157 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g00817 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0048.g030537 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g77516 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.02G103800.1 | SNL4, Ceric.02G103800 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.31G072300.1 | SNL4, Ceric.31G072300 | component *(SNL) of histone deacetylase machineries &... | 0.06 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001155.28 | SNL3, ATSIN3, SIN3 | Paired amphipathic helix protein Sin3-like 1... | 0.01 | OrthoFinder output from all 47 species | |
Dcu_g18942 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g18720 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g07946 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01020136001 | SNL3, ATSIN3, SIN3 | Chromatin organisation.histone modifications.histone... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01032579001 | SNL2 | Chromatin organisation.histone modifications.histone... | 0.04 | OrthoFinder output from all 47 species | |
Len_g04844 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
Len_g58076 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g03500 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g03517 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
MA_18241g0010 | SNL4 | component SNL of histone deacetylase machineries | 0.04 | OrthoFinder output from all 47 species | |
Mp2g12120.1 | No alias | no hits & (original description: none) | 0.01 | OrthoFinder output from all 47 species | |
Mp7g11300.1 | SNL5 | Paired amphipathic helix protein Sin3-like 2... | 0.01 | OrthoFinder output from all 47 species | |
Msp_g06593 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g24890 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g03860 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g30140 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g27695 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.01 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0277.g027077 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g14557 | No alias | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g25571 | No alias | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
Solyc02g067570.3.1 | SNL2, Solyc02g067570 | component SNL of histone deacetylase machineries | 0.07 | OrthoFinder output from all 47 species | |
Solyc02g087360.4.1 | SNL2, Solyc02g087360 | component SNL of histone deacetylase machineries | 0.02 | OrthoFinder output from all 47 species | |
Spa_g18268 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g13041 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g19320 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e017111_P002 | SNL4, Zm00001e017111 | component SNL of histone deacetylase machineries | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e025644_P001 | SNL4, Zm00001e025644 | component SNL of histone deacetylase machineries | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006355 | regulation of DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
BP | GO:0007010 | cytoskeleton organization | IEP | HCCA |
MF | GO:0008017 | microtubule binding | IEP | HCCA |
MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0036211 | protein modification process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
No external refs found! |