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  5. Adi_g114646

Adi_g114646


Description : plant-specific E3 ubiquitin ligase *(RSL/RFA) & original description: none


Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g114646

Target Alias Description ECC score Gene Family Method Actions
AT4G19670 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Cba_g16231 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.20 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g13139 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g40875 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os12g43560.1 LOC_Os12g43560 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 385 448
IPR002867 IBR_dom 469 517
IPR000571 Znf_CCCH 597 622
IPR002156 RNaseH_domain 171 279
IPR027370 Znf-RING_euk 307 352
No external refs found!