Adi_g105543 (HAP1, MEE63, MAGO)

Aliases : HAP1, MEE63, MAGO

Description : component *(Magoh) of RNA quality control Exon Junction complex & original description: none

Gene families : OG0003958 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003958_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g105543

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00121p00130180	HAP1, MEE63,...	RNA processing.RNA quality control Exon Junction complex...	0.03	OrthoFinder output from all 47 species
Aob_g08074	HAP1, MEE63, MAGO	component *(Magoh) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000944.21	HAP1, MEE63, MAGO	RNA processing.RNA quality control Exon Junction complex...	0.02	OrthoFinder output from all 47 species
Cre09.g392692	HAP1, MEE63, MAGO	RNA processing.RNA quality control Exon Junction complex...	0.03	OrthoFinder output from all 47 species
LOC_Os08g01660.1	HAP1, MEE63,...	component Magoh of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species
Nbi_g24780	HAP1, MEE63, MAGO	component *(Magoh) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
CC	GO:0035145	exon-exon junction complex	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	HCCA
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	HCCA
CC	GO:0097525	spliceosomal snRNP complex	IEP	HCCA
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	HCCA
CC	GO:0120114	Sm-like protein family complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004023	Mago_nashi	9	144

External Links

No external refs found!