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Description : not classified & original description: none
Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00029p00157690 | ARF6,... | RNA biosynthesis.transcriptional activation.B3... | 0.04 | OrthoFinder output from all 47 species | |
| AT3G61830 | ARF18 | auxin response factor 18 | 0.03 | OrthoFinder output from all 47 species | |
| AT4G23980 | ARF9 | auxin response factor 9 | 0.02 | OrthoFinder output from all 47 species | |
| AT5G37020 | ARF8, ATARF8 | auxin response factor 8 | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g014286 | ARF4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g089250 | ARF6 | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g14726 | ARF6 | ARF-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g41559 | ARF19, IAA22, ARF11 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g17029 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene05880.t1 | ARF19, IAA22,... | ARF-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene33428.t1 | HSS, ARF1-BP,... | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0011.g012740 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: CDS=1-2724 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0065.g035934 | No alias | not classified & original description: CDS=1-342 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0384.g067487 | ARF8, ATARF8 | ARF-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.18G060100.1 | ARF1, Ceric.18G060100 | ARF-type transcription factor & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g08681 | ARF6 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01021552001 | ARF6 | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01023149001 | ARF1 | RNA biosynthesis.transcriptional activation.B3... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01032251001 | ARF19, IAA22, ARF11 | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01035204001 | ARF8, ATARF8 | RNA biosynthesis.transcriptional activation.B3... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01035205001 | ARF8, ATARF8 | Auxin response factor 12 OS=Oryza sativa subsp. japonica | 0.04 | OrthoFinder output from all 47 species | |
| Gb_31132 | ARF4 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os01g48060.1 | ARF3, ETT, LOC_Os01g48060 | transcription factor (ARF) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os02g06910.1 | ARF6, LOC_Os02g06910 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g36054.1 | ARF1, LOC_Os04g36054 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g56850.1 | MP, IAA24, ARF5,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g43920.1 | ARF3, ETT, LOC_Os05g43920 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g18657 | HSS, ARF1-BP, ARF2, ORE14 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g40471 | ARF1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_127981g0010 | ARF4 | Auxin response factor 4 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g14175 | ARF6 | ARF-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g42999 | ARF6 | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g16843 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g28812 | No alias | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g30394 | No alias | ARF-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g081240.2.1 | MP, IAA24, ARF5,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g069190.2.1 | ARF4, Solyc11g069190 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g05322 | ARF8, ATARF8 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e003229_P002 | ARF6, Zm00001e003229 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e006577_P003 | ARF8, ATARF8,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e006640_P002 | MP, IAA24, ARF5,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e013061_P001 | ARF16, Zm00001e013061 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e018126_P002 | ARF6, Zm00001e018126 | transcription factor (ARF) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e020205_P004 | ARF3, ETT, Zm00001e020205 | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e028396_P001 | HSS, ARF1-BP,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e039552_P004 | HSS, ARF1-BP,... | transcription factor (ARF) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e041910_P003 | ARF8, ATARF8,... | transcription factor (ARF) | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006298 | mismatch repair | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0006950 | response to stress | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| BP | GO:0008104 | protein localization | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0009719 | response to endogenous stimulus | IEP | HCCA |
| BP | GO:0009725 | response to hormone | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010033 | response to organic substance | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0015031 | protein transport | IEP | HCCA |
| BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0033036 | macromolecule localization | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0042221 | response to chemical | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0050896 | response to stimulus | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |