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  5. Adi_g086844

Adi_g086844


Description : component *(SOP1) of PAXT RNA-exosome-activation complex & original description: none


Gene families : OG0004256 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004256_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g086844

Target Alias Description ECC score Gene Family Method Actions
Ala_g33279 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.06 OrthoFinder output from all 47 species
Aob_g26394 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Aop_g14012 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Ceric.23G086900.1 Ceric.23G086900 component *(SOP1) of PAXT RNA-exosome-activation complex... 0.06 OrthoFinder output from all 47 species
Dcu_g09581 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.06 OrthoFinder output from all 47 species
Dde_g04012 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01008802001 No alias RNA processing.RNA decay.exosome complex.associated... 0.06 OrthoFinder output from all 47 species
LOC_Os06g43120.1 LOC_Os06g43120 RNA degradation surveillance factor (SOP1) 0.03 OrthoFinder output from all 47 species
Lfl_g16590 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.07 OrthoFinder output from all 47 species
MA_140138g0020 No alias RNA degradation surveillance factor (SOP1) 0.03 OrthoFinder output from all 47 species
Nbi_g12684 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Pir_g15166 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Pir_g44148 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.02 OrthoFinder output from all 47 species
Ppi_g15340 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.07 OrthoFinder output from all 47 species
Solyc04g057990.4.1 Solyc04g057990 RNA degradation surveillance factor (SOP1) 0.06 OrthoFinder output from all 47 species
Spa_g22203 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Zm00001e037509_P004 Zm00001e037509 RNA degradation surveillance factor (SOP1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!