Adi_g079765 (RPL12-C)

Aliases : RPL12-C

Description : component *(bL12c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0004015 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004015_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g079765

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00109340	RPL12-A, RPL12,...	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
AT3G27830	RPL12-A, RPL12	ribosomal protein L12-A	0.03	OrthoFinder output from all 47 species
AT3G27850	RPL12-C	ribosomal protein L12-C	0.05	OrthoFinder output from all 47 species
Aev_g46439	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ala_g28151	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Als_g10576	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Als_g26767	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aop_g05079	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0003.g007798	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.23G047100.1	RPL12-A, RPL12,...	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cre13.g581650	No alias	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
Dac_g04548	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dcu_g15795	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dde_g20806	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
GSVIVT01032454001	RPL12-A, RPL12	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Gb_05150	RPL12-C	component psRPL12 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
LOC_Os05g49320.1	RPL12-C, LOC_Os05g49320	component psRPL12 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Len_g10218	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Mp5g15720.1	RPL12-C	component psRPL12 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Msp_g09960	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Msp_g10664	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g08072	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ore_g01687	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ore_g06697	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pir_g06429	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pp3c26_10990V3.1	RPL12-A, RPL12,...	ribosomal protein L12-A	0.02	OrthoFinder output from all 47 species
Pp3c4_24130V3.1	RPL12-A, RPL12,...	ribosomal protein L12-C	0.02	OrthoFinder output from all 47 species
Pp3c5_2700V3.1	RPL12-C, Pp3c5_2700	ribosomal protein L12-C	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0097.g019415	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Solyc02g086730.3.1	RPL12-C, Solyc02g086730	component psRPL12 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Solyc02g086740.1.1	RPL12-C, Solyc02g086740	component psRPL12 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Spa_g08718	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Spa_g56005	RPL12-C	component *(bL12c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Tin_g00273	RPL12-A, RPL12	component *(bL12c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Zm00001e020247_P001	RPL12-C, Zm00001e020247	component psRPL12 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Zm00001e028001_P001	RPL12-C, Zm00001e028001	component psRPL12 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	HCCA
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0070001	aspartic-type peptidase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013823	Ribosomal_L7/L12_C	127	194
IPR008932	Ribosomal_L7/L12_oligo	67	118

External Links

No external refs found!

Adi_g079765 (RPL12-C)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation