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  5. Ehy_g14545

Ehy_g14545 (MSH6-1, ATMSH6, MSH6)


Aliases : MSH6-1, ATMSH6, MSH6

Description : component *(MSH6) of MSH2-x mismatch repair heterodimers & original description: none


Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g14545

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00191830 MSH7, ATMSH7,... DNA damage response.DNA repair mechanisms.mismatch... 0.02 OrthoFinder output from all 47 species
Adi_g014384 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Adi_g108387 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Aev_g12224 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Cba_g02113 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
Ceric.09G018600.1 MSH6-1, ATMSH6,... component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.05 OrthoFinder output from all 47 species
Cre05.g235750 MSH6-1, ATMSH6, MSH6 DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01015407001 MSH7, ATMSH7, MSH6-2 DNA damage response.DNA repair mechanisms.mismatch... 0.02 OrthoFinder output from all 47 species
GSVIVT01028112001 MSH6-1, ATMSH6, MSH6 DNA damage response.DNA repair mechanisms.mismatch... 0.03 OrthoFinder output from all 47 species
Gb_07613 MSH6-1, ATMSH6, MSH6 component MSH6 of MSH2-x mismatch repair heterodimers 0.05 OrthoFinder output from all 47 species
LOC_Os09g24220.1 MSH6-1, ATMSH6,... component MSH6 of MSH2-x mismatch repair heterodimers 0.02 OrthoFinder output from all 47 species
Len_g08764 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Lfl_g02400 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
MA_10429110g0010 MSH6-1, ATMSH6, MSH6 component MSH6 of MSH2-x mismatch repair heterodimers 0.04 OrthoFinder output from all 47 species
MA_10435491g0030 MSH6-1, ATMSH6, MSH6 DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_214705g0010 MSH7, ATMSH7, MSH6-2 DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_41124g0010 MSH6-1, ATMSH6, MSH6 DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp2g14640.1 MSH6-1, ATMSH6, MSH6 component MSH6 of MSH2-x mismatch repair heterodimers 0.02 OrthoFinder output from all 47 species
Mp7g16850.1 MSH7, ATMSH7, MSH6-2 component MSH7 of MSH2-x mismatch repair heterodimers 0.02 OrthoFinder output from all 47 species
Msp_g15076 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.04 OrthoFinder output from all 47 species
Ppi_g08246 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.04 OrthoFinder output from all 47 species
Solyc07g018340.3.1 MSH7, ATMSH7,... DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Tin_g15143 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.07 OrthoFinder output from all 47 species
Zm00001e034087_P001 MSH6-1, ATMSH6,... component MSH6 of MSH2-x mismatch repair heterodimers 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR007860 DNA_mmatch_repair_MutS_con_dom 577 742
IPR007696 DNA_mismatch_repair_MutS_core 795 1111
IPR000432 DNA_mismatch_repair_MutS_C 1177 1367
IPR007695 DNA_mismatch_repair_MutS-lik_N 452 567
IPR007861 DNA_mismatch_repair_MutS_clamp 979 1066
No external refs found!