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  5. Adi_g066616

Adi_g066616


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g066616

Target Alias Description ECC score Gene Family Method Actions
AT1G14200 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G26800 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G55530 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G40830 RHC1A RING-H2 finger C1A 0.02 OrthoFinder output from all 47 species
AT3G02340 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G13430 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g107117 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aev_g02298 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ala_g26879 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aob_g03081 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aob_g03358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12129 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aop_g29180 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene63212.t1 Aspi01Gene63212 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cba_g10356 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24805 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ceric.06G020800.1 Ceric.06G020800 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.14G083100.1 Ceric.14G083100 not classified & original description: pacid=50633279... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.42 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dcu_g05540 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dcu_g07514 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09533 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26594 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
GSVIVT01009934001 CIP8 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g22830.2 RHC1A, LOC_Os03g22830 Probable E3 ubiquitin-protein ligase RHC1A... 0.02 OrthoFinder output from all 47 species
LOC_Os05g40980.1 LOC_Os05g40980 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
LOC_Os06g42700.1 LOC_Os06g42700 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os07g43740.1 LOC_Os07g43740 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os08g38060.1 LOC_Os08g38060 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os10g34590.1 LOC_Os10g34590 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species
Len_g16162 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Len_g22017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g31141 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Lfl_g30265 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_79051g0010 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species
Msp_g14693 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09253 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g24945 CIP8 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g36482 ATCRT1 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g50355 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pnu_g16883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10063 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012146 No alias not classified & original description: CDS=1-969 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019777 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g05103 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g17099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24681 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g27709 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g007895.1.1 Solyc05g007895 E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g00737 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g06543 RHC1A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05490 No alias RING-H2-class BTL-subclass E3 ubiquiTin ligase &... 0.04 OrthoFinder output from all 47 species
Zm00001e010857_P001 Zm00001e010857 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e024003_P001 Zm00001e024003 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 223 265
IPR039525 RNF126-like_zinc-ribbon 24 55
No external refs found!