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  5. Adi_g060201

Adi_g060201


Description : not classified & original description: none


Gene families : OG0003459 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003459_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g060201

Target Alias Description ECC score Gene Family Method Actions
AT1G04140 No alias Transducin family protein / WD-40 repeat family protein 0.03 OrthoFinder output from all 47 species
Ala_g13976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34304.t1 Aspi01Gene34304 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0061.g034941 No alias not classified & original description: CDS=353-2881 0.02 OrthoFinder output from all 47 species
Cba_g25022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g72126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.25G076900.1 Ceric.25G076900 not classified & original description: pacid=50594585... 0.04 OrthoFinder output from all 47 species
GSVIVT01028455001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_28988 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os02g18820.2 LOC_Os02g18820 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Lfl_g03437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428045g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g08660.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g25615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22155 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g12788 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e040649_P001 Zm00001e040649 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!