Adi_g059804

Description : snRNP-associated protein *(SR140) & original description: none

Gene families : OG0003274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003274_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g059804

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00064p00173090	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
AT5G25060	No alias	RNA recognition motif (RRM)-containing protein	0.05	OrthoFinder output from all 47 species
Ala_g02691	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01963	No alias	snRNP-associated protein *(SR140) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g42378	No alias	snRNP-associated protein *(SR140) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g21519	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46184.t1	Aspi01Gene46184	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46186.t1	Aspi01Gene46186	snRNP-associated protein *(SR140) & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.14G097400.1	Ceric.14G097400	snRNP-associated protein *(SR140) & original...	0.04	OrthoFinder output from all 47 species
Dac_g01031	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g04985	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g10046	No alias	snRNP-associated protein *(SR140) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g29046	No alias	snRNP-associated protein *(SR140) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01035985001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.09	OrthoFinder output from all 47 species
Lfl_g11150	No alias	snRNP-associated protein *(SR140) & original description: none	0.07	OrthoFinder output from all 47 species
MA_91836g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp6g17130.1	No alias	snRNP-associated protein (SR140)	0.06	OrthoFinder output from all 47 species
Ore_g09321	No alias	snRNP-associated protein *(SR140) & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g02308	No alias	snRNP-associated protein *(SR140) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g08483	No alias	snRNP-associated protein *(SR140) & original description: none	0.04	OrthoFinder output from all 47 species
Solyc03g025280.4.1	Solyc03g025280	snRNP-associated protein (SR140)	0.08	OrthoFinder output from all 47 species
Spa_g12506	No alias	snRNP-associated protein *(SR140) & original description: none	0.06	OrthoFinder output from all 47 species
Tin_g07962	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e013823_P001	Zm00001e013823	snRNP-associated protein (SR140)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003724	RNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	199	271
IPR000061	Surp	346	398

External Links

No external refs found!

Adi_g059804

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation