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  5. Adi_g058426

Adi_g058426 (SNL4)


Aliases : SNL4

Description : component *(SNL) of histone deacetylase machineries & original description: none


Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g058426

Target Alias Description ECC score Gene Family Method Actions
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.05 OrthoFinder output from all 47 species
AT3G01320 SNL1 SIN3-like 1 0.05 OrthoFinder output from all 47 species
AT5G15020 SNL2 SIN3-like 2 0.05 OrthoFinder output from all 47 species
Ala_g17667 SNL4 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Ala_g21578 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Aob_g27014 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Aob_g29157 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Cba_g77516 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ceric.31G072300.1 SNL4, Ceric.31G072300 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.28 SNL3, ATSIN3, SIN3 Paired amphipathic helix protein Sin3-like 1... 0.02 OrthoFinder output from all 47 species
Cre03.g180800 SNL4 Paired amphipathic helix protein Sin3-like 4... 0.01 OrthoFinder output from all 47 species
Dcu_g18942 SNL4 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
GSVIVT01020136001 SNL3, ATSIN3, SIN3 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
GSVIVT01032579001 SNL2 Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
Gb_35988 SNL4 component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
LOC_Os05g01020.2 SNL4, LOC_Os05g01020 component SNL of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
Lfl_g03517 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
MA_18241g0010 SNL4 component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Mp2g12120.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g02880.1 SNL4 component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Msp_g06593 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Nbi_g03860 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Nbi_g09686 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Ore_g28709 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30140 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ore_g35781 SNL4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g18041 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Sam_g14557 No alias component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Sam_g29972 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo440352 SNL4 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Solyc02g067570.3.1 SNL2, Solyc02g067570 component SNL of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
Solyc02g087360.4.1 SNL2, Solyc02g087360 component SNL of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species
Spa_g18268 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Tin_g13041 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Zm00001e017111_P002 SNL4, Zm00001e017111 component SNL of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species
Zm00001e025644_P001 SNL4, Zm00001e025644 component SNL of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR003822 PAH 68 112
IPR013194 HDAC_interact_dom 200 289
No external refs found!