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  5. Adi_g055203

Adi_g055203


Description : GRAS-type transcription factor & original description: none


Gene families : OG0002153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g055203
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00099410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRAS... 0.01 OrthoFinder output from all 47 species
AMTR_s00156p00061400 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.01 OrthoFinder output from all 47 species
Adi_g023237 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g048227 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.04 OrthoFinder output from all 47 species
Adi_g058149 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g067888 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g087308 No alias GRAS-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g088062 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g115825 RGA2, GAI GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g129595 RGA2, GAI GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11867 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.04 OrthoFinder output from all 47 species
Aob_g09046 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Azfi_s0019.g015002 No alias GRAS-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g19937 RGA2, GAI GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Gb_25709 No alias transcription factor (GRAS). component NSP2 of NSP1-NSP2... 0.02 OrthoFinder output from all 47 species
Len_g31597 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Msp_g13409 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Msp_g15867 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Ore_g12299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28747 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Ore_g28748 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.05 OrthoFinder output from all 47 species
Ore_g30474 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.04 OrthoFinder output from all 47 species
Pir_g16636 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Pnu_g24950 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Ppi_g04662 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Spa_g07286 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Spa_g22375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25920 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10282 No alias component *(NSP2) of NSP1-NSP2 nodulation initiation... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 522 781
IPR005202 TF_GRAS 421 477
IPR005202 TF_GRAS 818 879
No external refs found!