Adi_g042058

Description : component *(SRm160) of RNA quality control Exon Junction complex & original description: none

Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g042058

Target	Alias	Description	ECC score	Gene Family Method
AT2G29210	No alias	splicing factor PWI domain-containing protein	0.04	OrthoFinder output from all 47 species
Adi_g114714	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g07320	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Aob_g02107	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Aspi01Gene61525.t1	Aspi01Gene61525	component *(SRm160) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Ceric.1Z098000.1	Ceric.1Z098000	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Dcu_g46327	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Ehy_g07869	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Lfl_g10938	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
MA_1065g0010	No alias	component SRm160 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species
Mp8g09170.1	No alias	component SRm160 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species
Pir_g26508	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Sam_g07002	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.06	OrthoFinder output from all 47 species
Solyc09g030390.3.1	Solyc09g030390	component SRm160 of RNA quality control Exon Junction complex	0.04	OrthoFinder output from all 47 species
Zm00001e001194_P001	Zm00001e001194	component SRm160 of RNA quality control Exon Junction complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
CC	GO:0008023	transcription elongation factor complex	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
CC	GO:0016593	Cdc73/Paf1 complex	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002483	PWI_dom	71	140

External Links

No external refs found!

Adi_g042058

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation