1. Home
  2. Species
  3. Actinostachys digitata
  4. Sequence
  5. Adi_g025028

Adi_g025028


Description : regulatory protein *(RGG) of mRNA quality control & original description: none


Gene families : OG0000880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000880_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g025028

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00244720 evm_27.TU.AmTr_v1... RGG repeats nuclear RNA binding protein A (Fragment)... 0.02 OrthoFinder output from all 47 species
AMTR_s00056p00215280 evm_27.TU.AmTr_v1... RGG repeats nuclear RNA binding protein A (Fragment)... 0.04 OrthoFinder output from all 47 species
Aop_g04685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0002.g001594 No alias not classified & original description: CDS=186-1532 0.03 OrthoFinder output from all 47 species
Ceric.19G044700.1 Ceric.19G044700 regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000404.31 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g07259 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Dac_g18766 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g21101 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Dde_g01517 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Dde_g15710 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
GSVIVT01002125001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01018290001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os01g41880.1 LOC_Os01g41880 RGG repeats nuclear RNA binding protein A (Fragment)... 0.02 OrthoFinder output from all 47 species
LOC_Os01g52390.1 LOC_Os01g52390 RGG repeats nuclear RNA binding protein A (Fragment)... 0.01 OrthoFinder output from all 47 species
LOC_Os05g51180.1 LOC_Os05g51180 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g13836 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Lfl_g09581 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Msp_g10018 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Pir_g06151 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Pir_g08261 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Sam_g09394 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Zm00001e019955_P001 Zm00001e019955 RGG repeats nuclear RNA binding protein A (Fragment)... 0.02 OrthoFinder output from all 47 species
Zm00001e019958_P002 Zm00001e019958 RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 OrthoFinder output from all 47 species
Zm00001e026661_P002 Zm00001e026661 RGG repeats nuclear RNA binding protein A (Fragment)... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004019 adenylosuccinate synthase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006861 HABP4_PAIRBP1-bd 154 263
IPR019084 Stm1-like_N 1 73
No external refs found!