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  5. Adi_g017408

Adi_g017408 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA biogenesis complex & original description: none


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g017408

Target Alias Description ECC score Gene Family Method Actions
AT1G01040 DCL1, CAF,... dicer-like 1 0.05 OrthoFinder output from all 47 species
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.05 OrthoFinder output from all 47 species
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.06 OrthoFinder output from all 47 species
Ala_g13307 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Aop_g06264 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.05 OrthoFinder output from all 47 species
Aspi01Gene32281.t1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.04 OrthoFinder output from all 47 species
Ceric.01G108700.1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.04 OrthoFinder output from all 47 species
Ceric.1Z277300.1 DCL1, CAF,... not classified & original description: pacid=50600427... 0.05 OrthoFinder output from all 47 species
Ceric.22G041000.1 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.32 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000741.30 DCL1, CAF,... No description available 0.01 OrthoFinder output from all 47 species
Dac_g43749 DCL1, CAF,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13692 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Ehy_g15817 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Ehy_g18573 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
GSVIVT01001045001 DCL4, ATDCL4 RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.02 OrthoFinder output from all 47 species
Gb_34256 DCL4, ATDCL4 endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.02 OrthoFinder output from all 47 species
Gb_34257 DCL4, ATDCL4 Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
LOC_Os01g68120.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.03 OrthoFinder output from all 47 species
LOC_Os04g43050.1 DCL4, ATDCL4,... endoribonuclease (DCL4) 0.02 OrthoFinder output from all 47 species
Lfl_g06763 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
MA_10432726g0010 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
MA_10437243g0010 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.05 OrthoFinder output from all 47 species
MA_10437243g0020 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp7g12090.1 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.05 OrthoFinder output from all 47 species
Ore_g16091 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species
Ore_g27169 DCL1, CAF,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g005030.4.1 DCL4, ATDCL4,... endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.03 OrthoFinder output from all 47 species
Solyc08g067200.2.1 ATDCL3, DCL3,... Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Solyc08g067210.3.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.03 OrthoFinder output from all 47 species
Tin_g29214 DCL4, ATDCL4 endoribonuclease (DCL4) of transacTing siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Zm00001e041209_P001 DCL4, ATDCL4,... endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 605 722
IPR000999 RNase_III_dom 1555 1668
IPR000999 RNase_III_dom 1330 1479
IPR006935 Helicase/UvrB_N 205 370
IPR003100 PAZ_dom 1161 1293
No external refs found!