1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0444.g027392

Sacu_v1.1_s0444.g027392 (54CP, SRP54CP, CPSRP54, FFC)


Aliases : 54CP, SRP54CP, CPSRP54, FFC

Description : component *(cpSRP54) of thylakoid membrane SRP insertion system & original description: CDS=86-1885


Gene families : OG0005930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005930_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0444.g027392
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00204460 54CP, SRP54CP,... Protein translocation.chloroplast.thylakoid membrane SRP... 0.03 OrthoFinder output from all 47 species
Aev_g05995 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Als_g13104 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.03 OrthoFinder output from all 47 species
Aob_g13062 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.02 OrthoFinder output from all 47 species
Azfi_s0352.g066605 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Ceric.03G060800.1 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.07 OrthoFinder output from all 47 species
Cre11.g479750 54CP, SRP54CP,... Protein translocation.chloroplast.thylakoid membrane SRP... 0.03 OrthoFinder output from all 47 species
Dde_g10157 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
GSVIVT01033862001 54CP, SRP54CP,... Protein translocation.chloroplast.thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
LOC_Os11g05552.1 54CP, SRP54CP,... Signal recognition particle 54 kDa protein,... 0.03 OrthoFinder output from all 47 species
LOC_Os11g05556.1 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.04 OrthoFinder output from all 47 species
Mp1g05670.1 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.03 OrthoFinder output from all 47 species
Nbi_g12082 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Ore_g18771 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.03 OrthoFinder output from all 47 species
Pir_g60389 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.03 OrthoFinder output from all 47 species
Sam_g19770 No alias component *(cpSRP54) of thylakoid membrane SRP insertion... 0.02 OrthoFinder output from all 47 species
Sam_g29558 No alias component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Solyc09g009940.3.1 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.03 OrthoFinder output from all 47 species
Zm00001e024147_P003 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.03 OrthoFinder output from all 47 species
Zm00001e039381_P004 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEA Interproscan
MF GO:0008312 7S RNA binding IEA Interproscan
CC GO:0048500 signal recognition particle IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004019 adenylosuccinate synthase activity IEP HCCA
MF GO:0004096 catalase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008837 diaminopimelate epimerase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0047661 amino-acid racemase activity IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004125 Signal_recog_particle_SRP54_M 449 567
IPR013822 Signal_recog_particl_SRP54_hlx 128 205
IPR000897 SRP54_GTPase_dom 223 418
No external refs found!