Sacu_v1.1_s0188.g025169

Description : basal transcription factor *(TFIa/RRN3) & original description: CDS=149-1885

Gene families : OG0004620 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004620_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0188.g025169
Cluster	HCCA: Cluster_61

Target	Alias	Description	ECC score	Gene Family Method
Aob_g13469	No alias	basal transcription factor *(TFIa/RRN3) & original...	0.03	OrthoFinder output from all 47 species
Dac_g11606	No alias	basal transcription factor *(TFIa/RRN3) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g24337	No alias	basal transcription factor *(TFIa/RRN3) & original...	0.03	OrthoFinder output from all 47 species
Ore_g07151	No alias	basal transcription factor *(TFIa/RRN3) & original...	0.02	OrthoFinder output from all 47 species
Sam_g27581	No alias	basal transcription factor *(TFIa/RRN3) & original...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140223	general transcription initiation factor activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	HCCA
CC	GO:0034457	Mpp10 complex	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007991	RNA_pol_I_trans_ini_fac_RRN3	326	473
IPR007991	RNA_pol_I_trans_ini_fac_RRN3	70	331

External Links

No external refs found!

Sacu_v1.1_s0188.g025169

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation