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  5. Sacu_v1.1_s0186.g025050

Sacu_v1.1_s0186.g025050


Description : not classified & original description: CDS=193-4185


Gene families : OG0003507 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003507_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0186.g025050
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Adi_g021094 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g76856 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40779 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_19156 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_93646g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g05580.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Ppi_g17105 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08455 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005542 folic acid binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0072341 modified amino acid binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!